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ABSTRACT Examining the cues and drivers influencing seed production is crucial to better understand forest resilience to climate change. We explored the effects of five climatic variables on seed production over 22 years in an everwet Amazonian forest, by separating direct effects of these variables from indirect effects mediated through flower production. We observed a decline in seed production over the study period, which was primarily explained by direct effects of rising nighttime temperatures and declining average vapour pressure deficits. Higher daytime temperatures were positively related to seed output, mainly through a flower‐mediated effect, while rainfall effects on seed production were more nuanced, showing either positive or negative relationships depending on the seasonal timing of rains. If these trends continue, they are likely to lead to significant changes in forest dynamics, potentially impacting both forest structure and species composition.